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 > KAIST-related pages 
 > Query-related pages
 > Other Databases or Tools
   
   
 
 
 
 
 
 
 

Here are some links that may come in handy

 
   KAIST-related pages
   
 
1.

KAIST Homepage

2.

The Department of Biological Sciences at KAIST

   
 

 
   Query-related pages


   
1. NCBI Homepage has the following pages:
 
  PubMed         Entrez         BLAST         OMIM         Taxonomy         Structure
 
2. Expasy has the following pages, among others:
 
Databases

SWISS-PROT and TrEMBL

SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotations (such as the description of the function of a protein, its domains structure, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration with other databases.

TrEMBL is a computer-annotated supplement of SWISS-PROT that contains all the translations of EMBL nucleotide sequence entries not yet integrated in SWISS-PROT.

Prosite

PROSITE is a database of protein families and domains. It consists of biologically significant sites, patterns and profiles that help to reliably identify to which known protein family (if any) a new sequence belongs.
 

  Tools and software packages


Proteomics tools include the following:

Protein identification and characterization
DNA -> Protein
Similarity searches
Pattern and profile searches
Primary structure analysis
Secondary structure prediction
Tertiary structure
Transmembrane regions detection
Sequence alignment

 

 

 
   Other Databases or Tools



   
1.

EcoCyc

EcoCyc is a literature-derived electronic reference source for E. coli biologists, and for biologists who work with    related microorganisms. The database contains up-to-date annotations of all E. coli genes, as well as the DNA    sequence of each E. coli gene. EcoCyc describes all known pathways of E. coli small-molecule metabolism. Each pathway and its component reactions and enzymes are annotated in rich detail, with extensive references to the    biomedical literature.
 
2. KEGG
 
KEGG is an effort to computerize current knowledge of molecular and cellular biology in terms of the information    pathways that consist of interacting molecules or genes and to provide links from the gene catalogs produced by    genome sequencing projects. The KEGG project is undertaken in the Bioinformatics Center, Institute for Chemical    Research, Kyoto University with supports from the Ministry of Education, Culture, Sports, Science and Technology    and the Japan Society for the Promotion of Science.
3. WIT
 
WIT is a www-based system to support the curation of function assignments made to genes and the development    of metabolic models.
 

More to come....

 

            

 

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